NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066677_10005781

Scaffold Ga0066677_10005781


Overview

Basic Information
Taxon OID3300005171 Open in IMG/M
Scaffold IDGa0066677_10005781 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5040
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004347Metagenome / Metatranscriptome442Y
F015499Metagenome254Y
F042036Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0066677_100057812F004347AGGVQPETARWLNESRGSFGAAHSRFNDISSMDVTGAGALFMSAEYVVKAVIVEHYGFLPPSFETHRIVNLSHRIGLWPQLPPDLRTHLADMALFDPNVRYPRETAYETLVSSSSNAEWQQRLTTAPRFIQYIERDVIGNPTTLGKLTF*
Ga0066677_100057813F042036AGGMAQKGSQFRAEANPALRTVCAQCGKSIPTEVGHPHPLDAEDRGVWRETWGLVGMENGSPRVFPTCNECYQAGWRPPGFVH*
Ga0066677_100057817F015499AGGVGEVIAFEELVRMRRRRVALAVHARCRLILAASVAAARDELVTAPARERLVRLARLRKLEELQEYASALG*
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