NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066677_10043885

Scaffold Ga0066677_10043885


Overview

Basic Information
Taxon OID3300005171 Open in IMG/M
Scaffold IDGa0066677_10043885 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2205
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_56_17(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004018Metagenome / Metatranscriptome457Y
F010931Metagenome / Metatranscriptome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0066677_100438852F004018GGAMLGRLDEGVCFMTTTTRRAYWGVLVMVFVLVFSIGLFAQSRPAAVSTSPSPVARDLNTTLAELMRASPATSQDLTNLQQQGGRLHRVTFWRGDKAQKAKMTAALRRNLQFAVPDLIHDAQASGGSISTTFKLYKDLTVVCESLDSLLPPGSREGKTELTALSNDLSDMNRLREELSSYIQQTAASMESKNAQLVSSAGRSPKRVIVDDNIPEKPSPRKRRPSNQ*
Ga0066677_100438855F010931N/AQAGQMAKAYRTDVVGKKKFQEEIRQRRNALKPERVPCPFAGCECTYEMYGYRPSNLEDNVATLQERLKREHPDHTSEVLAVNEFRKVPR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.