NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066677_10113074

Scaffold Ga0066677_10113074


Overview

Basic Information
Taxon OID3300005171 Open in IMG/M
Scaffold IDGa0066677_10113074 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1452
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024280Metagenome206N
F051037Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0066677_101130741F024280N/AMALISIEGRKHKPKCAICEGEPVETVTTLAWRFILCSDHVTKFAARRLAEAERALLLQNKQPGGVSWQPSVCALCVDPADLIFTEKEGTFAFCQPHFIRYVLLALRPNEHSVLSGRLTPEQFLTRLSSKYYFEGMAEQPYFEDLDDPAYVVDTPLWET*
Ga0066677_101130742F051037N/AMVKLRDHEKMKELWPPKFEGPHGFWDQEHPGEEWGDLIQVKWVEPNRKGEQPFVKLIVHWDNVDFRSVICSEDTAFLKRLYLTLREHGIGKTLEDVGNLQVDF*
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