NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066677_10136686

Scaffold Ga0066677_10136686


Overview

Basic Information
Taxon OID3300005171 Open in IMG/M
Scaffold IDGa0066677_10136686 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1332
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073619Metagenome / Metatranscriptome120Y
F102878Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0066677_101366861F073619N/AMRLYGEANDVRGLATGPIETRFARLRENTSADTLIVWTTPTRWAAGEGLSLRFPQLHLEFTCSLADGHLVATKVAQVTEDARPPDREPGAVGVVVHPERVLLPPEDTDASEADIGVETLERHFAQLAGRRWGGFATPLRAALEAEAREDEARTQRLTVPFKEAALTRGGEEDVWRLKGVAVEALRALDDGEWLEILDDQGRSRTSARVIDTHPTAGTLIVGVRTASDPPRSGFVRP
Ga0066677_101366862F102878N/AVLADRLVLAHLAADVRGLLAEGQPVPAFPEADQPSGLPSLRVDAEAGFACTGFSIRGLPAIGIQSSRNDPPLAFLVLDVEQLGELLERARELLGTSA*
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