NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066683_10100077

Scaffold Ga0066683_10100077


Overview

Basic Information
Taxon OID3300005172 Open in IMG/M
Scaffold IDGa0066683_10100077 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1758
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019454Metagenome229Y
F021503Metagenome218Y
F042270Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0066683_101000771F019454AGGMDEDEVHEESEVEKSINVWRQSERKIMIETVQDLIQTSHKYAKSQYTPSAQRARWTKLAGQLIWYKDQILKNFSLEAMTIELQTLK
Ga0066683_101000772F021503AGGAMSSLPLKPPAGPKKLKKLLEKYTPREAYEILAAQIILANERTRDILPPSRVHAGSRKISITESGLQDIRTGRYGRVQLPSQEEARYWLQQWREAAKPKQETPVRKIFVRRKRSEVRE*
Ga0066683_101000773F042270GAGGMTKNKTLEGPLPPADKGVNDARPGLPTPTVRKNVTWVQPEPTTSDVTRPQQLSPDTTWAEPSTSKPKLAKGSTGISTTRDRTNE*
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