NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066680_10001285

Scaffold Ga0066680_10001285


Overview

Basic Information
Taxon OID3300005174 Open in IMG/M
Scaffold IDGa0066680_10001285 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10071
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011834Metagenome286Y
F026533Metagenome / Metatranscriptome197N

Sequences

Protein IDFamilyRBSSequence
Ga0066680_1000128510F011834N/ALFSKIHRLADGNVVVESDFYRVRLRFKRLFADPAIFEDQKNAVRRFLISPHLASNQVAIYQITDDISPSDNVGKSPDIAGTAKYIHRGRVVRSEYLENSNVTLEYADFGSGLSPDDHQRLWNRRKWGRMNFDLEEFHHEHLKIEIPAVPELYEMLRSRADPTTLVDVELPELSDNFFRSAVGYLEIRLKQLAELEHQIIDIYVARDLLPEEKAALEKRLTRPSTQSTIYIMLSKAEGTAHL*
Ga0066680_100012858F026533N/AMPIEKKQLSKKDVQKFDPSPLYLYTAKDALNRVTVLKEANRDAYLIAGRYSGNDSENRLYTPLNEEESKEIEKLVRIGRKDATISFL*
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