Scaffold Ga0066680_10004970

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066680_10004970

Scaffold Ga0066680_10004970

Overview

Basic Information
Taxon OID	3300005174 Open in IMG/M
Scaffold ID	Ga0066680_10004970 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6292
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010906	Metagenome	297	N
F105712	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066680_100049701	F105712	AGGAG	VIAGALMILPAYLNYELFHRLNLDITVSMSISLTSFALGILIFILVVGKERIEGPKKQ*
Ga0066680_100049703	F010906	AGGAG	LSNLRNLVGAENVLAECAGVNYTVYVTDSRLLVGKRFGLGEKYVNVPHAEVSTLELITKSLIPPLTYAVLGAIAVFLVWWFPGQARLSLPQAPFDLILIGTFTVFLAAVVATWWRRRVAVLRIGISGTKEPITVKLVPTSKAEGVFKALKG*

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