Scaffold Ga0066673

Basic Information
Taxon OID	3300005175 Open in IMG/M
Scaffold ID	Ga0066673_10000062 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005175 Open in IMG/M

Scaffold ID

Ga0066673_10000062 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20997
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (62.07%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20997

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (62.07%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002266	Metagenome / Metatranscriptome	576	Y
F005236	Metagenome / Metatranscriptome	407	Y
F007071	Metagenome / Metatranscriptome	358	Y
F007642	Metagenome	347	Y
F008127	Metagenome	338	N
F015713	Metagenome	252	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066673_1000006215	F015713	GGA	MKISWHDVAEDVEKHAHRLAEDIFALEPDVTEEVDLKALFERILGKEDWTDKLAAQLGRFKGLFHRSQKETELPEDLKQLIPNMGDVERAYVEITSGYKDFIKAVWVAQHERQWRE*
Ga0066673_1000006219	F007071	N/A	MSGLSLRLTEIRSFLLPVSQFAAWPIFFLLTSAISQQPAYFLALLLVLAADVIDKSPRNRGLFRDMVAGGATTLLAFFINDLDGVAIGAIVTVAATSRLIQKLN*
Ga0066673_1000006222	F008127	GAG	MSDDFLPRAHSKRLGELERSNWKSLRDGRNIHRIDPAIREIVSLLNNKGYRTFSSCSGGHPTNPRWKVNRHESGYLAFSPPSNVAFALYLGLRKKNRDFTVEAQAVIDDGDGGDRETVCTRFYWQLSDRKKHKLEHYHKLFSQMREIIEGLPRAPGNGNEVLTGLFGKGNLQTGLRIVKGQMKRFTAN*
Ga0066673_1000006223	F007642	N/A	MPSLSTREAVTVPEKPLAEVLVEGELSPFEHEVLYRILRKGFRLEHPSYAELLDEDLATRVNITFHYPYVTTVFTDVLRENWRELKELLRQVRYRRGKAGAAVTLSFLGEKNKLVFKSGVLEEKELSSALDQIGHLTGILGQMLRPETMDKPLELVEAVYDKKSDRWHEFKGFASADQNQSYVFDESVFRWIRL*
Ga0066673_100000627	F005236	N/A	MGFLSIMGKILIGLAMLTMPVAVSLILVFSETLTTIGVAISLGASIFVFFCGIYAGFLGIKYERLQQQFESFVNPLKIRPNAVNLIKAICPIDQEQIVFVHVSPHRDDARPDGLDIFLGSCGHEVHRGEIEVEQPAESA*
Ga0066673_100000629	F002266	N/A	LKTQGEIIEFIHDKGLVSTLGGNELPSFISCILGKPWKPSAKGFSGWLDWWSTKISGQPVAHVSRDIEGRKDILATRIFRRTKTFVSGELWPILDIIVKHHQDPAVKQQILSDIELKILETIETEGSIRTDRLRKKLKLEAKENNSKFHRSLSHLESYALIVGVEDPRPEKHLHANIWQTWDTRTHEGSGRNSLSYSEALGKLLAKTVDVCVLVREDQIPKWFEWSTDMQPVKEKLLLEGTVLRSGPYLVSSKVRDVNN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066673_10000062

Overview

Ecosystem & Geography

Associated Families

Sequences