Scaffold Ga0066673

Basic Information
Taxon OID	3300005175 Open in IMG/M
Scaffold ID	Ga0066673_10000192 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005175 Open in IMG/M

Scaffold ID

Ga0066673_10000192 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15850
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (83.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

15850

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (83.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F013625	Metagenome	269	Y
F029058	Metagenome	189	Y
F029708	Metagenome / Metatranscriptome	187	Y
F038612	Metagenome	165	N
F072144	Metagenome	121	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0066673_1000019213	F013625	GGAG	LVYSSVAYYSLSRPPSQEFMAWGVFSPNGTLSNYFSGASANVAVGQTQNWHFAITNQMGSIQYVQVVYRLANSTSADPNATVPGSAVSQLGNRSIFIPNAQTGFVNFTWSIKSTNPSPGGMVFITMTINGQQVSPSVSAIGGQGFRFFFELWTFDIASSSFQYGYQGHGSRVGLPLQVWFNSA*
Ga0066673_1000019214	F029058	GGAG	LDKALTYFSQLPSGISTQTSNVPAVPSYSYGLTVLSEQGVSAIVWATGLAYFVLVRKLRPRELFMGGLFLAAVSTIPVAVFGRADVLQRSYLFALFPFIILTAWLLERRTVLTLRGRNLFRLVKVGFIVTMVLFSAIIPLTRYGVDPIEYIPSSSLYVSNISSGLTQQHSLLFLHPDEDGWRFYAGINGAIREPKLEQKNLANQPGGYVKPSTDPTVPGFNLTYTPADGSANYVVLTTYWQNLYTLRFGSNSAIYIQARNNYTDIVMQNFNLVYSTGTDQIYANQALG*
Ga0066673_1000019216	F029708	GAG	MLFYKEHVKTLDEGSIGEAYLLLAQAGAKFFSYADRWAIFEPVYATVPDHWHRVASDLDERAQDYGQILKTPRMIIDNHDGTIVRAYPEKNEDTPGP*
Ga0066673_100001922	F038612	AGGCGG	VKKILLTLSGTHGSGKSTNAGKCYYLLNRSGYKFSYIRHQDLLDPFGFIVRRTARILHLEPNRLEKMKPTRVAWSIYLLFIYCPILVGGIKLRNLFGYSVVSDRYLYDVMVGFRDNGMTVPSENLLMRLLPRPDISFVLDAPEQRILADRPEHSGAFIRKEKILYRQVADHFNLSRISTSDPPSIVWSNMLSEIKVALGERTSVEQITLQQVIG*
Ga0066673_100001923	F072144	N/A	MKLNFLEEIGGVKTARREAESLLLATALLKNDEISVKDEDRMLKLAKKNKVLLRAATLIHLPSNVVDEAKKDAAEAFDLYDQMSNIFTQHGVSFVAIKSFDSLPDIGHDIDLLVPSPTELAETEKLLINQYKVRPQGLTHCDRLLGKFSCFLQGYNHDFELYPTISQLGETHLDPSQVLLHRRRETVEGHEVWMTSDSDRVLIRVIHAMFRHNFLKLSDILDFLKLIETASSQEVLEKIDNALIGDAFIFYLASIERFLKACQVENRRFQELKKSAQEVFGDDRLRFLRRDRLVLPYRIPTAAIIILFLIKAARDAARARWKSSIFCLVAPPLIVLDFISAAFRAGGRGGVW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066673_10000192

Overview

Ecosystem & Geography

Associated Families

Sequences