Scaffold Ga0066673

Basic Information
Taxon OID	3300005175 Open in IMG/M
Scaffold ID	Ga0066673_10000512 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005175 Open in IMG/M

Scaffold ID

Ga0066673_10000512 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11527
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (64.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11527

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (64.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008609	Metagenome / Metatranscriptome	330	Y
F010607	Metagenome / Metatranscriptome	301	N
F015844	Metagenome / Metatranscriptome	251	N
F090183	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066673_100005121	F090183	GGAG	LAKDQARDVPHPFEKVWDTAFRILQQPGWNLVRADKGTGGLEVKIVMDLLTWTETFYVNVTRIDENTTRVLMGRIGLSQPLDWGLAGQYIDSFFNRLESALQDAT*
Ga0066673_1000051212	F008609	N/A	MKRSFVVIGIILVGFGIAAYYITSQTNLIGGRTHSTYPLGGIGLAVVGALIAAGGVMMGKAGAKMAGQFKCSKCGMTFGSQIALDQHSKDKHGM*
Ga0066673_1000051213	F015844	N/A	MLLDPVSTRRVFEEKMTETMYRHAMSTAFKNWHSLGLAAVLYAVNVFLLSIGKDMINTSSQSFGGWVVLVVAGYLFIGAVYLVSATLTENSTLSESFPGVIDHFRTFIVGAIAYAIGYFLLFNVAPPLQTTQTLAAAVTLIVGGAIYLVAILVGVAAAFVRPRK*
Ga0066673_1000051216	F010607	GAGG	MVKVNHYRVVARFARLFPDPAVFEDQDHLVERYLTQSGLLREKASYLYQNEDEIIPVDDSGKPAVASGTASFRFQGKNIIAEFMPNASLAVEYYDFGTGLSPEDHARMWKKQHIGEMAFQVRDFAHETRTLNVTNISELYEIMKKQGQATSLSSIELATMPEDLFRVTVAYLKSQLRESAGEDALEVEVYAARDLSASERSSLEKRLTRESTGSTVYVILSKPSQLMKIETR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066673_10000512

Overview

Ecosystem & Geography

Associated Families

Sequences