NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066679_10000027

Scaffold Ga0066679_10000027


Overview

Basic Information
Taxon OID3300005176 Open in IMG/M
Scaffold IDGa0066679_10000027 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29897
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (60.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023077Metagenome211N
F048885Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0066679_1000002720F023077N/AMITAMALLASPVYSATMNPQENVNLYTGNKLIIDSNQQSIKSVVVRGNLTAATLSNNAYPSKNFTLTTNSTQLYTVDLLLSYQAPYTSEIVISDPSTGSNSQYTSYFVSGGDLNLTIFASFQAAPSTGPSTPLGWASFYGWISQFGGAFPFWIKILYAVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKVYLWTEVVFRTLVAGFAISLAIMIGEVLVLLIAQYLLFVNLNLISLVDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED*
Ga0066679_100000274F048885N/AMFTCTKCDKREFQLTQLSEMRLLAECPSCGASFIMDTVTEKRPRVEASDPNQHIIWDWKAEKWIPAKRD*
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