NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066679_10055039

Scaffold Ga0066679_10055039


Overview

Basic Information
Taxon OID3300005176 Open in IMG/M
Scaffold IDGa0066679_10055039 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2305
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023811Metagenome208Y
F041660Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0066679_100550393F041660AGGAGGMVSHETKRILGLTSLAFILIIILARALPLPFPGSHSLAFPRNPGGPSPYTPVLIFSDNVSLTSRTPTFNLTLTQSHSYMWKFNVTFGSVKINLTDPRTGSIFWTVGPYSSGQWHLNGTGFVTFNWTAPASTYYSLVLVNQNLSQWLPNGFVHTSPYSVCDIHVWDLDTRAPLRVIF*
Ga0066679_100550394F023811GGAVSVIFIASLVQVIRGRVLLLRPRRGEAFASIFFAFMATGLVVLVYNVDPISNWTLLAGVWAGSEAVILYLLQNQRKNEKEFQKHPVAFPNPEGGGILGEYVNRPWQSELAELGRRYPSKKTKKHKKED*
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