NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066690_10006112

Scaffold Ga0066690_10006112


Overview

Basic Information
Taxon OID3300005177 Open in IMG/M
Scaffold IDGa0066690_10006112 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5706
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003458Metagenome485Y
F076915Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0066690_100061122F003458GAGMAESRIPPGASLLLIGSGLYWILSSQLISSFTVLTPGLFQGSELGASLIAIVGIVSATLGLWIVNVDFDELRSLFSRRDGWIFTVPLALVAADVYLTLIVLSTNPQIVELNPFVSSAIRIGASALIPFIISYLALSQGLGLLMLRVGSYLFGPLKSYRYLPFVLICGAAGFGPASNLVLFLDPNVGVGAYVIGALGCAMLSTILFTRVDKFGNDLGKPKFQSPE*
Ga0066690_100061125F076915GGAGLTTTMASNTTSALQKQKPTLEQEVFKLKLEWMMAKNDDEKRRISEEIRRRIGITPSKSQ*
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Institute for Fundamental Biomedical Research
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