NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066690_10039608

Scaffold Ga0066690_10039608


Overview

Basic Information
Taxon OID3300005177 Open in IMG/M
Scaffold IDGa0066690_10039608 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2812
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014368Metagenome / Metatranscriptome263N
F016387Metagenome / Metatranscriptome247N
F022177Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0066690_100396081F022177AGGTGGMRLKGQTWARKEEEILDEFDSFVQSLRGVGVDYNIIVMVKGRVPRQIHCEYETREAKAEVAREGSGA*
Ga0066690_100396084F016387N/AMQSRANIKINLALLHHTPSASRQIERKAAFRLQYIANGLPAYSGQSYAVHTGKMIADCKRRETYRLSACNDPRGFQGQKMTLAPTRTMLELKSTPVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKAGKFGFIQVPTSLVEKVFSILSDEEARELGREAGANTVPEMILFWFKKFNPENALKAMEMIGSYGNAFRLQYTLDGETDTVVLKHDRGPRVSAFYGEMFQSLFKPMGARVETRETDGQVVATIIRPLTGLASEHKDAPLIPSFAGAKNGRGYKR*
Ga0066690_100396085F014368N/AMTQLESALKPEVRRSPDTVTRTFRIDRDVDRKMEGLSSEGRVSMNQMANKALRRYVEWEVNAEKFGTVTTSASTIRKFFDYLTIEQAKEMGSWWGENQAPGIITFWFKKFDFDSVLKALEFLGAQYGRAFTSDYAFDGRSHTLIVKHDMGLKASVFYAEAVKAAFSHLGLGTDIFVTDDQVIAISPPDPA
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Biomedical Sciences Research Center "Alexander Fleming"
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