Scaffold Ga0066688

Basic Information
Taxon OID	3300005178 Open in IMG/M
Scaffold ID	Ga0066688_10000913 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005178 Open in IMG/M

Scaffold ID

Ga0066688_10000913 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10933
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10933

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010022	Metagenome	309	Y
F014723	Metagenome	260	N
F023077	Metagenome	211	N
F041118	Metagenome	160	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0066688_100009133	F041118	GGAGG	MTRLSFELVDPNSGEGASAEAVVDRKLIEDLNSYRSQGSTSKAFLIWIDTVKGEVSWQLRKIPDFDL*
Ga0066688_100009135	F023077	N/A	MMTAVAFLVSPVHPATMNPQENVNLYTGNRLVIDSSQSSIKSVVVRGNLTAATLSNNAYPSKNFTLTTNSTQLYTVDLLLSYQAPYTSEIVISDPSSGSKTQYTSYFVSGGDLNLTIFASFQTAPSTGPSVPLGWSSFYGWVSQFGGAFPFWIKILYAVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKVYLWTEVVFRTLIAGFAISLTVMIGEVLVLLIAQYLLFVNLNLISLVDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED*
Ga0066688_100009136	F014723	GGAG	LSEQYHRLFLRWEVLRGWIPAIIFAATCVGLELLFFYNALNTGFVDKTVSIPIGSWTLPISIALFLSLGNALVVVTLWMNVFESTAYVKAGPDKQVRRILYPLRMIRTAALVLAPFTIFLFAPYIVEANWFVSAVASIQAFKPTTESFYNWAFNVSQIDGATRFIISQMTAALGALIIAGLQLWRVKGTKNLVRAFQRRK*
Ga0066688_100009137	F010022	N/A	MRKNILVAGVTLLATALLFGVSYPAGLLFSIPISILNIILGLITRASPGSEIQPESANIRLLIDRGVVRASIYQLVFLNSKLILKRLSSVMVTVILAFVLAVVGLAFLFIVGALMGGITGFSLQEFLTQRMRNKIGSKMELTSVEKGDIEIEYDDILEVRLVKSRLYLTARNKSLSASFPRGYSRKMKPMLESIFESRFTTEESIRAAEAAEKENEKRQHPRGDRSKFPRR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066688_10000913

Overview

Ecosystem & Geography

Associated Families

Sequences