NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066688_10041492

Scaffold Ga0066688_10041492


Overview

Basic Information
Taxon OID3300005178 Open in IMG/M
Scaffold IDGa0066688_10041492 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2616
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024279Metagenome / Metatranscriptome206Y
F024522Metagenome205N

Sequences

Protein IDFamilyRBSSequence
Ga0066688_100414921F024522AGGAGGMNSRLAVILLLGMVPPVACTAAAQTARVGAHYGVNLSDGHWEDERLGAQASVHIVGPLETAGAFSVFTAWPGATGFTGSAWQAYWTMRVRPRGPWSFASVGYGFVLLHSSLRNASLQLDTSGSDFTDAIVLGVETPTPHVRPFADLYLIDILDRESAVGVNLLMGVQIPVPTRNTN*
Ga0066688_100414924F024279GAGMRARALLVALLVGSAARSAGQESVDTALTIQGFLQQDNEVGLWTIVVPLPLQVLETRTYVVPLVGKPERWGRYLNRYIEASGRVTRLPERGNPGIGMEVEKAKELEPPGTARTTVDHGMTLHADITLSVIPNRFRWRDTTGSSTGVNPLLVYTILNRRSAPIFFVLPTNRFLCVAVKSSEGISVWDTATIVRRLDGRRFTMQRGGFFRDALHFPEDAASRPGHYYARVGICDVDDYDITAEFDVR*
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