NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066688_10108620

Scaffold Ga0066688_10108620


Overview

Basic Information
Taxon OID3300005178 Open in IMG/M
Scaffold IDGa0066688_10108620 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1703
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010455Metagenome303Y
F011479Metagenome / Metatranscriptome290Y
F017116Metagenome242Y
F020766Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0066688_101086201F020766N/AVSRVDLVTGGIVLFTIMVAAGIVPLIMALKVKIHALRVLSLLLGLFAIVHGFYHLASGFQQGLLADAVFEPASLILLIGLGAYYSKVGVA*
Ga0066688_101086202F017116N/AMALFETFNLLLILLAFVIFTRLAFKGKGLGNFRFQLSIFLLIWVISEIPHIAESVGLIATSGYEDLGLYLHALSMGVFALFVGWRSLKFVTLHPTPPTGMISVPTEQPKGLKG*
Ga0066688_101086203F011479AGGMNSANFDDLVSQSVTEAMSEILGTNTWKAINFFFDTKTAARKPEAFATLLDKMFGLTSKVLQRKIGEILLGKVGSVQQSSNNLDFRQILRLAKARFPMPPLSGS*
Ga0066688_101086204F010455N/AAEKTLLAIKECKRYLEDVEKELSRMSKKFSNEEIAQGVGFAVTGIHEALTYLAIVKRVIEKTERIVAKKHIVSDKEIDDIPGDP*
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