NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066684_10025719

Scaffold Ga0066684_10025719


Overview

Basic Information
Taxon OID3300005179 Open in IMG/M
Scaffold IDGa0066684_10025719 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3134
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005560Metagenome / Metatranscriptome396N
F038167Metagenome166N

Sequences

Protein IDFamilyRBSSequence
Ga0066684_100257193F038167GAGVIGWLNKERWILVALALVLTASILNPGYAAAPSPQENVSLYAGNRLIISSTQQAIRSVVVRGNLSAAIVSNVNYPAENFTITTNSTQLYTLNIWLSYPSTYTTAITINNPLSRSNSLYTSYYVSAGDMNLTIFADFQPAPSNGGGVPLTWSSFFGWFSQFGNAFPLWIKILYTILGAQFTFVGYRWIKFEDDKRGLRATCLH*
Ga0066684_100257194F005560GAGMPAIVFAAIAVAIEVLYFNYMVSRGMMDEAFTISLGALKIPLSIALFFSLANAIVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVKSAAIVITPFTIVLFTPYIVESSWFIGAVASASNSIPSLKETAVNFYTWSFGLARMDYSVKFVVSQLSAAFSSTAVSGLLLWRVKGTRNLMLALRRKK*
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