NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066684_10257793

Scaffold Ga0066684_10257793


Overview

Basic Information
Taxon OID3300005179 Open in IMG/M
Scaffold IDGa0066684_10257793 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1147
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001935Metagenome / Metatranscriptome615Y
F019913Metagenome / Metatranscriptome227Y
F090360Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0066684_102577931F019913N/APQKAQEYYQYLLAHHETEHRVQTWHVDWLSLAWLWGFVAALALVLLLWVRQYRTTRQKGIYLVDTWSGFTSELAGPATRFFLLLTAILVGFAIALIVGHLVNGQIF*
Ga0066684_102577932F090360N/AMIAAPPFAAYSTMTEAVVPSAEWPYVYASLQAFKAHVQEYPGCQRLEVFVFVEDDVGIRVHCYSTWDTLDQLEAFLERGYTFERMLADTADGAVERSLVMEKLF*
Ga0066684_102577933F000280GGAGMARRRIPARPLSGYRDVGHVRHSRRSVTRAWIVLAVMMAAYLVWTLVVYFLEPGLR*
Ga0066684_102577934F001935GAGVWIRHLSSLQFLTYVAFFAIVIASIVTIVPGRAPPLRRESYPDDELGRHDRKLAKYFVAGGGFLVLGALHMILKNLPWTAEWLARSGYAGHLVRDLSNTHVMIVGGGTL
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