Scaffold Ga0066685_10002442

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066685_10002442

Scaffold Ga0066685_10002442

Overview

Basic Information
Taxon OID	3300005180 Open in IMG/M
Scaffold ID	Ga0066685_10002442 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8654
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013871	Metagenome / Metatranscriptome	267	Y
F069726	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066685_100024427	F013871	AGGAGG	MLLRCSLRSHCNSLCQLRGELCPRFNPNMPSCGMHTKSKIVCAGTFYLFALIQVAAAAPPPDRCEYPPGLHDEISKKYPGTHLVGLADLEEYDRKLYRKDHGTRCPGLVHVNFYGDGKPTYALVLIAGENPKRRAQLVVAHQVGNDWEIRSLETTDGTPVVWRQGPGKYDGMYEEEQQILARNPVIVFCGYGSWAILYAWTGAEVKKIWLSD*
Ga0066685_100024428	F069726	GGA	MIEPPRNVLELPFSERALLALRAAVENAIEEHAREGLPMYIWRDGRVVAVPAEELRKRS*

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