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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005180 Open in IMG/M |
| Scaffold ID | Ga0066685_10004261 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7162 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023811 | Metagenome | 208 | Y |
| F041660 | Metagenome | 159 | Y |
| F050245 | Metagenome | 145 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0066685_100042611 | F041660 | AGGA | MVSHETKRILGIGSLVLILIVLLVRILPVPFPGSHPFAFPRKPGGPSPYTPALIFNDTVSVASGTPTFNLSLTQSHSYMWRFNVTIGSVKINLTDPKTGSVFWTVGPRSTGQWRLNGTGFVSFNWTAPASTYYSLVLENQNLSSWSSNGF |
| Ga0066685_100042612 | F023811 | GGA | LLLRPRTGEAIGSVFFAFIATGLIVLVYNLDPVSNWILLAGIWAGSEVVILYLLQNQRQNEKEFQKHPVSFPNPEGGGIVGEYVMRPWQNELAELGQRYPGKKSKKQKRKD* |
| Ga0066685_100042617 | F050245 | N/A | VRAEIRYYIDAHKAQRFKLNLFELMSLNSFPNPVNQTLYFNNDEHEVPFTYSIRGRRYEQKPFKERFKLKLGDKWIFEVKNTRSEHGRFIRHKRRNEMLPLREILSRVKRVRQLGRVRIPHKLGIYAAASYSRNHFLESDRGVRVTMDEDVRYFTFEGLTGTTLGASSKAIVELKIPPGRTSSPLVRKIHGLLRRENAEQGISKKATIFNLIEDRARKSGEAYKEPSHNTEIKAKLALDSEDQDIFPRIRFDLSEGKIEGFRLSNSYPSVMETGRLYHYVQVPTHEYVRFETSGQARSATIKEDFQVVQDPYRLGNVIKRREIEEPIQSDMLKMPYKILTRRRKYFMVERDGENREYAVMMDRSTHRGHELYQLEVEDVLTSPSPRAETRSINDVASMANYLIEEYSLEPTILTKNQWLMSLPN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |