Scaffold Ga0066685_10008612

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066685_10008612

Scaffold Ga0066685_10008612

Overview

Basic Information
Taxon OID	3300005180 Open in IMG/M
Scaffold ID	Ga0066685_10008612 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5569
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017200	Metagenome	242	Y
F018153	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066685_100086121	F017200	GGA	MQPITYSVSKGLRAGAIAGFVGSIVLGIFGEIGAVAMNQELYYTTVARRMGFGDSSVLGAWTLHFIVGIVAGSIFIGATAAIRRFSLTTTKKAIWVGMLGGIAIWIAVYVPVTGILVPEDLTNTTFAGGSLVLHVLYGVVTAIVSLSILRRTVRTKTTV*
Ga0066685_100086126	F018153	N/A	MRLSSVFGRRKTLVLALLATAVFAAVTYGVVTYQTPYGCGPDGVATGPGIDWQVLAKPCIYIYFTGIVGGSVLLILLIPVAGKKSDH*

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