NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066685_10159781

Scaffold Ga0066685_10159781


Overview

Basic Information
Taxon OID3300005180 Open in IMG/M
Scaffold IDGa0066685_10159781 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1536
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004288Metagenome / Metatranscriptome445Y
F005798Metagenome390Y
F014602Metagenome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0066685_101597811F004288GGAGMNGGHFDGRIEKRLPTSVPVYLASLDEPRSRERTLTENVSPHGARVISQRFWQSGEESLITPLTGEFRQVGRVIYCLPTAGDRFCVGVEFSDHT
Ga0066685_101597812F014602GAGGMIDSWTKKSANGKTVTLKIEGDRKSGFVYSAGMAGRDIKEITGSLKVLTREDVEIMFASYVAGR*
Ga0066685_101597813F005798AGGALSTTLRQVGADTEVEKLRRKVELGNKMKHVPALHLATAMALQGMTKEELEALKLRIEEKGV*
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