NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066678_10119877

Scaffold Ga0066678_10119877


Overview

Basic Information
Taxon OID3300005181 Open in IMG/M
Scaffold IDGa0066678_10119877 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1615
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F009517Metagenome / Metatranscriptome316Y
F032795Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0066678_101198771F032795N/ALAGLFAVHRIVASAPVSFGAPPIAVAGGGITGPAPQPSSGSGVFPNGVPRGGNGFGIHPGARIARQTVL*
Ga0066678_101198772F000703N/AMRVREYQDSDLAELRAIHAAQGFDYALPDLRNPLFVTKLVLSDENVVPPFRAASVACDDEAASQDAGLKPGATKEKTLGAAFLRLSAEAYLLLDPRAGTPRERWHWLLALHAAAERDAWQRGLEDVHAWLPPPIAKKFGKRIARLGWLRDDAWTPYCKKLAEEK*
Ga0066678_101198773F009517AGGAGGMGRGAQSNTRQMTDQERANIDALNQQFFGQQQQIGSTLLPQYQSILNNPGLSPADKAAVTGQSQGALGSAFDSLQQSAQNRLARTRNSAGFGELTDELARKKGIAEGGQAQKNQLAFT
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