NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066678_10288451

Scaffold Ga0066678_10288451


Overview

Basic Information
Taxon OID3300005181 Open in IMG/M
Scaffold IDGa0066678_10288451 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1071
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008075Metagenome / Metatranscriptome339N
F009595Metagenome315Y

Sequences

Protein IDFamilyRBSSequence
Ga0066678_102884512F008075AGGAMRESREFANTFQLSVAEGLADTLGSIVMQTLKTLLTYSLETYAEKPSELHRELSKVFGSGATTLERMITKELFQRLSRRYSNELGFEASVNLARRDMILSERGNN*
Ga0066678_102884513F009595N/AGRLLRSDIIETFQGMLVQCFSQTIENLFGRPVKEQLIRILAEHKIPKSEIGARFDDVARVLTDVFGSSSRLLIFKTVVELYEEYSVRATFGFYDSLKDQILYLRERVLADIIKPRHSPTIDDSIYVTGPRRIG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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