NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066671_10005949

Scaffold Ga0066671_10005949


Overview

Basic Information
Taxon OID3300005184 Open in IMG/M
Scaffold IDGa0066671_10005949 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4492
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018437Metagenome235Y
F023825Metagenome208N
F053212Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0066671_100059492F023825N/AVTPSRPKTPLRATLFNVSSFVVTSFVACGGRDRTHSPTCGMAQLIGPSLIQDQLRLSPFVLTEPPRGLPGSLPARVAGSAQQSTVAITYSGQRLALAYQGANFPPYPSDTAVYALLVVDDSSQRAQGVLLYEGQRPPRSYPQLGMVSGGDKTIPLYGVRVDWRGVSNPHCPLLGSPASTP
Ga0066671_100059493F053212N/AMIRPHGVVATVLLWTVQGASLEGTWLLTRIFRAGSPATTRAVPLDSTVYIRMSLESHTGGWFTGSLYRRYFGQPERTKLGGGPLRGTGRWILGAGLDHPVSQEAKTAAWLVGDTLRLGTPFVPDADSLEFRRVPRDAPDPTSVTEVVTPR*
Ga0066671_100059495F018437GGGGGLTARGDSSIIAGMSSRVARAALVAAALACNGGLQPTPAPPSISGIVTYRGAAPDSTQAVYVVAYQTFPHTRDSLFTFQPPVPQPLPLGVATAAYRIPVEPGRYEWVLAVWVKQGFTLANADSTLRETGYYRDPADTSQPGVVDVLTQPATSIDFVIDFGHMHPPCRYYTPPCP*
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