NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066676_10537100

Scaffold Ga0066676_10537100


Overview

Basic Information
Taxon OID3300005186 Open in IMG/M
Scaffold IDGa0066676_10537100 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)793
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063858Metagenome / Metatranscriptome129N
F089579Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0066676_105371001F063858AGGAGGVPSKGGRTTATTNPTVGPPVVASQPVAAAPPVVATPAVLRTRDEWENAGFTVAEIGRPLRRGVDVERFNELAAREDGLVPEEAEELYRYRLRRVQSRLRQLARASNRADDAGIRAAIDDLDGRLAELRRLEDERQRAGLAIGYELELDQRQAAIDQLLELARRRPPGLVAGSNHAPTQPTGEVRLAPVAFQPSPNDVPVYI
Ga0066676_105371002F089579N/ARRAAPHRHLVVCNGMAYGLAQRRRLLARSRDLVVRSARECFLLNCAENDRAYASILHRKEAA*
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