Scaffold Ga0073165_116178

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0073165_116178

Scaffold Ga0073165_116178

Overview

Basic Information
Taxon OID	3300005189 Open in IMG/M
Scaffold ID	Ga0073165_116178 Open in IMG/M
Source Dataset Name	E2 T11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Alicante
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	529
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Mallorca 2014 E2

Source Dataset Sampling Location
Location Name	Salinas de Campos (Mallorca)
Coordinates	Lat. (^o)	39.338015	Long. (^o)	3.051796	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088354	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073165_1161782	F088354	GAGG	MTDTDTPRAELDVDRFETTTVNANGQIYLGRDLEGVKVHVAIEIVTDGDEN*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.