Scaffold Ga0073161_105430

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073161_105430

Scaffold Ga0073161_105430

Overview

Basic Information
Taxon OID	3300005190 Open in IMG/M
Scaffold ID	Ga0073161_105430 Open in IMG/M
Source Dataset Name	E2 T-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Alicante
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1009
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae → unclassified Haloferuviridae → environmental Halophage eHP-42	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Mallorca 2014 E2

Source Dataset Sampling Location
Location Name	Salinas de Campos (Mallorca)
Coordinates	Lat. (^o)	39.338015	Long. (^o)	3.051796	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054456	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073161_1054303	F054456	N/A	VIAMAYNPNLDFKTDTEKLTPQQAHDRWEDVTNLDTPELERLEDSRRNELYLDAAEGNQDDDNPPIPGGPLDDAQHLASTPRDEWGPDERAEAEEAINFLSRTMPQFEQSEGEALIEDEPPKIHKDELSIMRWGVDPAPEDDFI*

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