NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073162_1011580

Scaffold Ga0073162_1011580


Overview

Basic Information
Taxon OID3300005196 Open in IMG/M
Scaffold IDGa0073162_1011580 Open in IMG/M
Source Dataset NameE2 T6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Alicante
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)858
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Mallorca 2014 E2

Source Dataset Sampling Location
Location NameSalinas de Campos (Mallorca)
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054456Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0073162_10115802F054456GAGMSYRPDLDFKTDTEQLSPAQAHDRWEDVTNLDTPELERLEDSRRNELYLDAAAGNQGDDNPPIPGGPLADAQHLASTPRDEWGPDERAEAEEALNFLSRTMPQFEQSEGEALIEDEPPKIHKDELSIMRWGVDPAPEDDFI*
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