NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073164_1049621

Scaffold Ga0073164_1049621


Overview

Basic Information
Taxon OID3300005198 Open in IMG/M
Scaffold IDGa0073164_1049621 Open in IMG/M
Source Dataset NameE2 T9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Alicante
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)534
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Mallorca 2014 E2

Source Dataset Sampling Location
Location NameSalinas de Campos (Mallorca)
CoordinatesLat. (o)39.338015Long. (o)3.051796Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038111Metagenome166N

Sequences

Protein IDFamilyRBSSequence
Ga0073164_10496211F038111N/AMNHRVPVVNRPEYTIWLENYRNIANFIHADVYKYNKTVRKDFGKDLDRLMDLHVDPLYVLTETDNKKLKKFMSIYGFELDHRPQCDDGVAREVFRLTRRQ*
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