Scaffold Ga0072941_1285091

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0072941_1285091

Scaffold Ga0072941_1285091

Overview

Basic Information
Taxon OID	3300005201 Open in IMG/M
Scaffold ID	Ga0072941_1285091 Open in IMG/M
Source Dataset Name	Microcerotermes gut microbial communities from Indooroopilly, Australia - IN01 metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Queensland
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1819
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut → Termite Gut Microbial Communities From Australia

Source Dataset Sampling Location
Location Name	Indooroopilly, Australia
Coordinates	Lat. (^o)	-27.5	Long. (^o)	152.9	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000500	Metagenome	1073	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072941_12850911	F000500	AGG	MSCYSLQPGHYSSLPAANFQPTATXERNNQCGNKHFSRELLMMDIVVPET

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.