NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068994_10103114

Scaffold Ga0068994_10103114


Overview

Basic Information
Taxon OID3300005216 Open in IMG/M
Scaffold IDGa0068994_10103114 Open in IMG/M
Source Dataset NameWetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLA_D2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)735
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.209923Long. (o)-122.033409Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022657Metagenome / Metatranscriptome213Y
F051787Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0068994_101031141F022657AGGAGMAEITTSQIGNGTTAYGSDIVVKDLDLDVSNRVKDDTPVLNMCMSKKRKVNSTLPLWTDDIYRAPAVQAQVEGAVVSTSQAESNQRYNL
Ga0068994_101031142F051787N/AGQIRPNVEQFRAIRSQQVAERLESARKSFQDKELKNEYVFKEIREKVTKIWPQASQEIIPGVPNIDLISSDEALLSLIRDGLKFRDKPTTKSAGASVAALTSRRGSSTNNRSGDDNIEKLRAQAKAGDKKAADNLLVARLQSIRGNRGR*
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