NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073350_110471

Scaffold Ga0073350_110471


Overview

Basic Information
Taxon OID3300005223 Open in IMG/M
Scaffold IDGa0073350_110471 Open in IMG/M
Source Dataset NameSylvan Springs Unknown 12.1A - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)949
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.699217Long. (o)-110.767467Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094112Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0073350_1104712F094112GAGMSQSNIAVYNRGYNTITITDPTTGKTSVNLGLTTYNYPILAIHIYINNTSNPASGYVKAVITPLDELVTGYTGYSPTIEYFIDAYKGAMYIPLAPHEYVNITISISAGANLLYDAFLYDWMGER*
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