NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073350_111488

Scaffold Ga0073350_111488


Overview

Basic Information
Taxon OID3300005223 Open in IMG/M
Scaffold IDGa0073350_111488 Open in IMG/M
Source Dataset NameSylvan Springs Unknown 12.1A - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5605
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.699217Long. (o)-110.767467Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026046Metagenome / Metatranscriptome199Y
F071410Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0073350_1114886F026046N/AMAGLLEIYEGYLNKPSCDAIDNIRIGKDGRGYRKLRKEDIPIEWLNYAKKHGIKVRNKTLIIGDALDPIDPNCLPIMNAFYPRNSNGKWCCTPSIAQYTNNGGQTPTQVCFSAGGNNAINIPYFGIALIDANGKLDLLMDTNNVISSSTPNFINPSVTSPSILCGSQQYNGSISMSFTAMPTTILTISTAYLLIGTNTLASGGVFSTIIEWTGINYQTTQNIPLTINIYLSVY*
Ga0073350_1114887F071410N/AMSKDKDLSSYRFNKESTLQLIAVGISNQVSKARGSVVSITTSNILSELNDDKPIVGFVAWRSIVKYFLDALVSRGYMTVYRKGNKKPYNTARVHVYLIPKRLRHNIPNPLFSTDPNLIYVFLKSVLSNVD*
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