Scaffold Ga0073350_119129

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073350_119129

Scaffold Ga0073350_119129

Overview

Basic Information
Taxon OID	3300005223 Open in IMG/M
Scaffold ID	Ga0073350_119129 Open in IMG/M
Source Dataset Name	Sylvan Springs Unknown 12.1A - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22619
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (60.00%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (60.00%)
Associated Families	15

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.699217	Long. (^o)	-110.767467	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F070317	Metagenome / Metatranscriptome	123	Y
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073350_11912910	F087442	GAGG	MMKEGLVKVRNLIVDCKPCYVAGTGFTKDDVYVVSEGTVVFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNESCMVTKL*
Ga0073350_11912911	F081547	GGTGG	MPYLRGVFINFGEETYYLSCGIVNGGNLDTETYTISNPDLMMVRLGRDIYIVTSQLKLLIPVEPIKVLLSSETSKVYNEALSQGNEVKPV*
Ga0073350_11912912	F076263	AGGA	MLSAEDLSAILDDLEDMCARIPDGVTFHPTLEIHRHYANEEATYIKFDCRNHKYILTIVRAGVAKTTRVSSREQLFKRVFPEYSPGYNGNYTEEFWGGE*
Ga0073350_11912913	F080247	N/A	MIVWGKLIECIIDADVNYLNGEVFNSQLRIKGKFLTFGNLYTLEKTTPGGETIQICSPIDATFMAYYQGMVAVISFYFREKDIYANISLTDPDTIKEFMTMSTYYKKYGVSIPNVLDKIMYRKVPT*
Ga0073350_11912914	F061983	AGGAG	LDIPEVEGGGRVLKKFVFKVKVVPVKIFNDDELLSEQEFEHVKKTRIYKGMKVLEIKDLGYDSFWRTTHYHELVTIIEGEGLFDCYYGDVIDVKKLKNVGGIVVKEKDIPPVRTMKTLVAKWHNKKLVEEEKAYEMCTKFVM*
Ga0073350_11912916	F085905	N/A	VEEQLSFPSSRLSQFDYVGMNAYWLNVRLKYFTDPILYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDTLFIVALTHYFNLKREREYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKLDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRHLKK*
Ga0073350_11912917	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMSKAYEKSSTRRNQRAVNGFTTLKQVQQTVRDYLNEVSASLKAPVIAQLAVEFIGIAMAYLKGSNEGYNSYALTGRVAQIATLRATHIIHTTTLTCAQVGEIINGMLKKLSGVTADPLTFTEDDGVCKATVANPLTKLSVASASTGFTVALADIFKAKTPEEVLMGK*
Ga0073350_11912920	F087445	N/A	MTSSSVKPGDELVQRLMNMSEYELKRVFKMIPIDKRLALALDTMQEYENIRSKFDNLLNSLAMNAPRVKEVVEKSRRDRKPMDRFVDMIMDMVETMMKSKAMSLTDEDREKLREKVKEMIKDEE*
Ga0073350_11912922	F076264	GAG	MSAISSAIQSMVAGLQNLFVAMIELFANAVNAIGNTLSSLAQPIGYLIGVLAVFGSLLAIIYGVFRGRSGVSGLIGGLRGFFSSFI*
Ga0073350_11912931	F070317	GGTGG	MQTTVNNMPTIEELKELNLERIVKDAQEGEVCVVNKILEGKLTDLMPLIRDPATLSQKAMEFIQRRGDDPFYLFQCTTRQGKNIKLLVRQSFNPRSTFYQLMKKYKTIKVGDEVIVFYNPEKGRYDFLL*
Ga0073350_11912932	F077502	GAG	MTDVAHIVIWIEKNLPEEGKLSELINNVFSLIEEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEVKEQVDAYFLKKLNDIYDKYYE*
Ga0073350_11912934	F077499	AGGTGG	MADLFVFPNESLKPVNYPNITNAEIIFVLTISIPIGSHPESEAPMDEKVRFLSTYTPLEFQKLYYMKTIDKALDILKHLLYTREDNVLFEIANKINDMYDVKELINKVKDVECAKDLKTLNVTLTEAKRYIYPDISLSKYASAQAKELGIKKYEYYAKLFQCYIETDKNMDMLTLFRISNLVFNFLRINNLSYIIKKMQFKDNNISRIAEKIKQRVKITLDAMADRKPVELNEDILNSITIKIKEIDLG*
Ga0073350_11912935	F056742	N/A	LKLADCRYKCKQSYFRRSLFVRMFIVEVEKVYQVKIKSCEEFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYMCLKCNSTLTAEESVTHTLQHMKELGYRPLAYNENL*
Ga0073350_1191298	F075084	GAG	VRPCQKDLCLLYSLGADYAKLIDFTRENPTGKLFEAGGRAMSYASGLMRLWYGYDTNSLLERSLRRILRYSVIYCNIMRRLGLESEYCRRYTQYNGVPCDLVSVFTVETTYADILHMIVNYNNENVSKVLTKMTEMCSTYEVK*
Ga0073350_1191299	F080245	N/A	VIFVWSARVVIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTSIEDLNYPLNTINNVFT*

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