NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073350_143393

Scaffold Ga0073350_143393


Overview

Basic Information
Taxon OID3300005223 Open in IMG/M
Scaffold IDGa0073350_143393 Open in IMG/M
Source Dataset NameSylvan Springs Unknown 12.1A - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8708
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.699217Long. (o)-110.767467Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062912Metagenome / Metatranscriptome130Y
F077497Metagenome / Metatranscriptome117Y
F087443Metagenome / Metatranscriptome110Y
F097670Metagenome / Metatranscriptome104Y
F099549Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0073350_14339311F099549N/AMDTTLQYPYQIPDLKTLFLIDFGNIVREIVSLLTYSGISADTKTFDEEELKNKLRAAIAYALGLLASALGYSMSAKTQQDVQIAKESLKALFDRIVTDPEITYPDLLDIYFELIQVVSIILNYGTPIPQPRTGNYEIT*
Ga0073350_14339315F097670N/AMNYKVFDKDIYTETDEIIIINLKTGETNHEIKMYFYDGKELKEIKDFQEYNLKLYEIGQKVQEEFTKFSTKYAKPPIGYIPISNIIYEFMLNRNNVILIAYANISKVENEVSKEITNDTIKIIVKSKTIFNKEWNFESTQNLSPEIKDNITKIIEKALKSAKTILKNNL*
Ga0073350_1433933F062912N/AMDPQVILAETYNLFLISDIIDNNSDIDRELEQLLVGKDYTNMAKTIIYALIYTLNNDPAYRNIRQIYINEAVDLLYIIDRVEFNDEKIIKKFVNFLYQFYSYSLQYKINFIADKEKREFVKAKLDELINIVQWEQ*
Ga0073350_1433934F087443N/AVLALQYLKNFLNIRYNMGQRKNYWMTFEDSDNVDYIDKEITKIGVDLDLDPSEIRAWIFKAFIYDSEVRAKILEYIKKNGQGKNQ*
Ga0073350_1433935F077497N/AMDKERISEIEEIIERHLFDEANNTEYDLKKMDVIIKYLIYQELKEWGNSLSLIDEAISSKE*
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