Scaffold Ga0073692_1000455

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0073692_1000455

Scaffold Ga0073692_1000455

Overview

Basic Information
Taxon OID	3300005238 Open in IMG/M
Scaffold ID	Ga0073692_1000455 Open in IMG/M
Source Dataset Name	Microbial communities on the surface of aged kaolinite enhanced biochar from soil in Sydney, Australia
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10238
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Microbial Communities On The Surface Of Biochar

Source Dataset Sampling Location
Location Name	Sydney
Coordinates	Lat. (^o)	-33.91794	Long. (^o)	151.235369	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003908	Metagenome / Metatranscriptome	462	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073692_10004557	F003908	AGGA	VNRITTLACAAALGACSSPAKQPLTQEQMIAADPLPLAKGAKWTYDVTVKRYDPDSDKESTKTLSWTTEVLDAHEANGVTAFKVRGWPADLASVEDNATPQATERTLLRSGNNFLFGSTPEPTLDGAEGWFTWPVIDGQKICPKTEMVYCWQVTAVETGYALSFYTGPDEQTFELEPGTGVSRYHYAHHGTTNEVDAKLASYTKGH*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.