NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073692_1003879

Scaffold Ga0073692_1003879


Overview

Basic Information
Taxon OID3300005238 Open in IMG/M
Scaffold IDGa0073692_1003879 Open in IMG/M
Source Dataset NameMicrobial communities on the surface of aged kaolinite enhanced biochar from soil in Sydney, Australia
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3034
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Microbial Communities On The Surface Of Biochar

Source Dataset Sampling Location
Location NameSydney
CoordinatesLat. (o)-33.91794Long. (o)151.235369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021141Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0073692_10038795F021141N/AMSEPNVLVNFRLDKDKPLRLRWLATDGVPGDGYKAQVTGVVLPDGARLQMDASAILEQSHPDPSGGLGAYFVTFNGMVGYPTNHPDRKHIDAFEDQEIEYDLEFVHEESGRRAVDNEDFKIVDKPRGWAHKLTKRAPSQPAP*

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