Basic Information | |
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Taxon OID | 3300005239 Open in IMG/M |
Scaffold ID | Ga0073579_1168760 Open in IMG/M |
Source Dataset Name | Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | J. Craig Venter Institute (JCVI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24728 |
Total Scaffold Genes | 37 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (29.73%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine |
Source Dataset Sampling Location | ||||||||
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Location Name | Gulf of Maine, USA | |||||||
Coordinates | Lat. (o) | 43.2393 | Long. (o) | -68.368612 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F080631 | Metagenome / Metatranscriptome | 115 | N |
F102086 | Metagenome / Metatranscriptome | 102 | N |
F102107 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0073579_116876012 | F080631 | N/A | MIRTDIIKRLQSYLQTHYNGGITILTEEDDGDLTPPCAVVRIGSAEDMGANQAYVWDFNVIVAVFHDADDVTIETAETQAAALFDELADYVDVIAYLNSGNFQASVWHPQMIEAGREDTKWTHFQTYRLIAGPA* |
Ga0073579_116876016 | F102107 | N/A | MAITTNEIIWGETYNISVSAQDSGGNAVTLNGTWSAACRISKDYIGGDVILNPTMTIAAGVATTSLDTGNDEFSHGVYYYDVRLTDANGHDYWTSPVRLILANRNTPNT* |
Ga0073579_11687606 | F102086 | N/A | MQTAIANSIKDAFVQHRADYGVSITIDSETVTAIVSESQFARELMEGGFADEGDIEVKVLLSDLTQIPSLGKPVSFRSRNFRVSRVGTQPGALVGEISCRPSKR* |
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