NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0073579_1184020

Scaffold Ga0073579_1184020


Overview

Basic Information
Taxon OID3300005239 Open in IMG/M
Scaffold IDGa0073579_1184020 Open in IMG/M
Source Dataset NameEnvironmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6541
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location NameGulf of Maine, USA
CoordinatesLat. (o)43.2393Long. (o)-68.368612Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025055Metagenome203Y
F032303Metagenome180N
F069319Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0073579_11840202F025055N/AMIEIKNNTIKKTFAYKGEDNFAFLKNEVFWLNYLKSKWVPELIEVGDNYVITRYYGPDLNTQRNNKVKLADDLSDQTLEMYKFFKEKNVFKLNGALSNLTMNGNQLVAFDWKWARFRTDKYTDYEMFSYEKWLSKIDTELVDKLKCMI*
Ga0073579_11840204F032303AGGMIKHIAEIEALDFASKQEHKDNWHKDFYYWKRHLLALKNWPWLKKFYKGGKWLGHFDEKLNGVYWYNLQGDEMYDGFLISSKVGVGIRLGRWLEKNIKYKTNWSCCSKQYVKFNERLGFEIKSMDNIEEQEVFLLCRKKY*
Ga0073579_11840207F069319GGCGGMLDSYTFKPSELPKIYRVQIKDIIKDIVNDKTDLYWKNYTDEEFNIDEQTAISVSCKEDKVKVISTIYHREFFGEGVYRLWNRFLYSKDFRETGGSKKRDGVHINHPVLEQQIDFVEKLNPKFYFISRQRTNTRWLKYYFDTFNKEYNRNLVVNDNQYWVCGGKKENCVQTIIYPKDMKVPLKQYK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.