NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073579_1189337

Scaffold Ga0073579_1189337


Overview

Basic Information
Taxon OID3300005239 Open in IMG/M
Scaffold IDGa0073579_1189337 Open in IMG/M
Source Dataset NameEnvironmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57510
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (23.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location NameGulf of Maine, USA
CoordinatesLat. (o)43.2393Long. (o)-68.368612Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000918Metagenome / Metatranscriptome834Y
F001217Metagenome / Metatranscriptome745Y
F103885Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0073579_118933725F103885N/AMATLLEKIKPRYRKSIEDSQYTYSSSRIIAKLESSTFYGELTITEIRDIYDMCGINALRVSAWDYRFGDNILTEND*
Ga0073579_118933726F001217N/AMSRTKFNGFEKYFIQTALRHAIEQAEVDVLATESAGKRCIYAPGYFTMVGNEIIDKVNSMTLKKFQD*
Ga0073579_118933729F000918N/AMYKTNQQAWDEVTRSFIEAKKRTKICVDLFGQENLKGLSDEQRELFWNSI*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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