Scaffold Ga0073579

Basic Information
Taxon OID	3300005239 Open in IMG/M
Scaffold ID	Ga0073579_1190517 Open in IMG/M
Source Dataset Name	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005239 Open in IMG/M

Scaffold ID

Ga0073579_1190517 Open in IMG/M

Source Dataset Name

Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

J. Craig Venter Institute (JCVI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	73084
Total Scaffold Genes	99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (21.21%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

73084

Total Scaffold Genes

99 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (21.21%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location
Location Name	Gulf of Maine, USA
Coordinates	Lat. (^o)	43.2393	Long. (^o)	-68.368612	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Maine, USA

Coordinates

Lat. (^o)

43.2393

Long. (^o)

-68.368612

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020790	Metagenome / Metatranscriptome	222	Y
F040861	Metagenome / Metatranscriptome	161	N
F048320	Metagenome	148	N
F048411	Metagenome	148	Y
F049943	Metagenome	146	N
F062174	Metagenome	131	N
F090879	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_11905171	F048320	N/A	MRTLYIILLLTTFSLLTSCGSVKGQAYVDVNENIDFENGEDLRYRTRFKVGYKIYLGEKHNILKDKRKKKEE*
Ga0073579_119051763	F090879	N/A	MEQLDTLTLNQSEENMDFSLHDHYAERIKYHMTMLNYYLKEEKNDRMGN*
Ga0073579_119051775	F049943	N/A	MYKFKTKYKSCFTAIDELQYVRQGDSPPSPYKDNAPREKQANYNFSIVSPVSSGKYIPINSYQLTGKGVSTKAKIYNEYDQYNNDLVDGHTVFGKIDNYAKRRLFKKDKVIYDLIY*
Ga0073579_119051782	F062174	AGAAG	MTKTMIDPKITKDLDNYLSYHRKLKRMKELMGGEYRMEMNVESCRPLIEDGFDLSDIVEYFILELRDYTDNRYMDDIRRLKEIEAEKAEANDA*
Ga0073579_119051784	F048411	N/A	MKMTINWNDGTYVFHHNKITKSTLQNNTDCDNITNEITEMFNQLQQ*
Ga0073579_119051792	F040861	N/A	MLETLKPIKTTPTGIYFRMADGRIGYANHQYARVSVTREGIRNGEYYKEDNEIGDRLYQINSREEINREYDYDGVKKTFSGIARIKYNDISEAINALQNFNNKNCGEYAVELRKNKILKQYEEHKALNVKSYLTKERVKEADAWVEAYNEGYNEGFTEGVASIEDKLVKLINNL*
Ga0073579_119051793	F020790	N/A	MRISKQMMDDKLLQIATFEEKYGEDHGITSVNAMKKYCSNKQYRERVHAFNKASVNTIKKYFKLI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073579_1190517

Overview

Ecosystem & Geography

Associated Families

Sequences