NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068639_111722

Scaffold Ga0068639_111722


Overview

Basic Information
Taxon OID3300005242 Open in IMG/M
Scaffold IDGa0068639_111722 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0300_T MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)781
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F019420Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0068639_1117221F019420GAGMTDGDREATVIRARLLGMVIELGDDDKRPDKMTAFYEVDGGGIIVYEVDCFEADGRMTARWQRVASL
Ga0068639_1117222F004307N/AEMFKELISNGNHSERPELNGAYIGRFLGVKERQRPTFETRHNPEPTLEDVFVFEFEVVDAEFDAPVRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVSVMTDAQLERAEEFVQEAVGREYQLTIETKPSGWCEIVHIAPARRTRQRKTKEDEDVPF*
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