NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068643_1079582

Scaffold Ga0068643_1079582


Overview

Basic Information
Taxon OID3300005243 Open in IMG/M
Scaffold IDGa0068643_1079582 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0900_T MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1077
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079732Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0068643_10795822F079732AGGAGGMPLMDATKMIDKYITDFGTEVENLSIKILEGYAEKVSEYVERTTENPCPAGDLFRPRALIATFEDGTKVKYPIGDRSNLVARARELLSNDAVCIDYEGEYWPYVPSTLIQNTNYRAIPLGGFTNNGSKTVGTFNYQSDILGNIVQPFAIESEPAVLVTAAVNCLSDVVYGSGFCTGARSLNLKARRFRGKGLVAGDTKKTYSRDIKMSSTDPTSCGAANAPNYYCLSYIGESIKNLHLILPTS*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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