NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073583_1181991

Scaffold Ga0073583_1181991


Overview

Basic Information
Taxon OID3300005253 Open in IMG/M
Scaffold IDGa0073583_1181991 Open in IMG/M
Source Dataset NameMarine sediment microbial community near Loki's castle
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUppsala University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31636
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (54.05%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Community From Loki's Castle, Arctic Ocean

Source Dataset Sampling Location
Location NameLoki's castle hydrothermal vent
CoordinatesLat. (o)73.763167Long. (o)8.464Alt. (m)Depth (m).74
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008189Metagenome / Metatranscriptome337Y

Sequences

Protein IDFamilyRBSSequence
Ga0073583_118199111F008189AGGAGGMDYQEELKRLQESGNYWKPKVGQYKIKALTELEDTDPYIRRHDDKEDEVSPQAKIKILVEGEEKDWTFGKGKTPLSTFGQLIELATKHANQLTDLEFSVVVKSDGTKNEYTIVG*
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