Scaffold Ga0068714_10169355

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068714_10169355

Scaffold Ga0068714_10169355

Overview

Basic Information
Taxon OID	3300005254 Open in IMG/M
Scaffold ID	Ga0068714_10169355 Open in IMG/M
Source Dataset Name	Enrichment culture microbial communities from rom New York Harbor, USA that are MTBE-degrading - MTBE-NYH (New York Harbor Sulfidogenic) MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	962
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading

Source Dataset Sampling Location
Location Name	USA: New York Harbor
Coordinates	Lat. (^o)	40.67	Long. (^o)	-74.01	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062885	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068714_101693551	F062885	AGGAGG	MNVSTLREMPRPNPAIASGCSVEVGPLRFKVWHKSPTYLCLLAGQDPSALCEFREGTTLTLEYFDGNSRLPSERLNTAVRKIKRNVGERLKGQYLVDLEILKSYH*

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