Scaffold Ga0074075

Basic Information
Taxon OID	3300005256 Open in IMG/M
Scaffold ID	Ga0074075_13608 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005256 Open in IMG/M

Scaffold ID

Ga0074075_13608 Open in IMG/M

Source Dataset Name

Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11001
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (84.21%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11001

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (84.21%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Norris Geyser Basin, Yellowstone National Park
Coordinates	Lat. (^o)	44.733	Long. (^o)	-110.708917	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Norris Geyser Basin, Yellowstone National Park

Coordinates

Lat. (^o)

44.733

Long. (^o)

-110.708917

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F018963	Metagenome / Metatranscriptome	232	N
F023140	Metagenome / Metatranscriptome	211	Y
F027904	Metagenome / Metatranscriptome	193	N
F067921	Metagenome / Metatranscriptome	125	N
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074075_136081	F067921	GGTGG	VMESFERVDDRLLRNGQYLLVSYSGAKNPAQAMFTGFRVVKHNVTTLYYNFATEVPNFLPMAPYGTSPGPTNSPPYIDNFSFSLQEVKNVTDMFKITNTGDAYQVFYGISPSYLRVMNKVQQQFVSVLEQNIYPSNSFVEMGVDGFQSPLNNPSAKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVVNRMILEPLGREELKKAILAGFPIRSLGAVDSSIMISPDNYPGLVTLSYREIYGG*
Ga0074075_1360810	F023140	N/A	LKLHKRILLSNVFIGLVTVPVYILLKSFPFLAVFGVGVLTTLTVLILFFYFLGAKFVGTWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLDYVVLFLVGYTVSTPLIFLTYHVTRWLYVKKGTT*
Ga0074075_1360817	F018963	GGAGG	LDTLGDRPVGAKLMFPYVHGEDGSVTDTLIMSFRTGRIVHSKLSVNKFGHGYRAYTLLPANYLMYEAYRTNKGRASIKISVIDVSPNPLSHFRVKDIWVMYEGVSPVTLLEDLPGNIRVIIEGNSGELPLYEYLETEVPK*
Ga0074075_136082	F027904	GGTGG	MEKYEPPEYDLFNLNNGSTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVVIQNATTSLITVQLLAVSTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI*
Ga0074075_136086	F006070	AGG	MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLVRLGESVPPVRAFNIYVYNYANADLNVQVIANENAKNYQYGAFLDGLDYQSESSYPDFNVGSPVTVASGSLQPGVQTIQADFYSTSAERYISLALTYSTAPTTGFVRAHIVLFYEGF*
Ga0074075_136089	F076262	GAG	LSSQPVIRGSYTLASPQTVSVAATGSATVSISFTPQGAGSLYVYITLPTGVTATISIGAQTVSLSSGSNQFLIPANVAIGNVTINNSGATAESVVVWALFIEVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074075_13608

Overview

Ecosystem & Geography

Associated Families

Sequences