NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074075_13973

Scaffold Ga0074075_13973


Overview

Basic Information
Taxon OID3300005256 Open in IMG/M
Scaffold IDGa0074075_13973 Open in IMG/M
Source Dataset NameHot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1426
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameNorris Geyser Basin, Yellowstone National Park
CoordinatesLat. (o)44.733Long. (o)-110.708917Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033507Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0074075_139732F033507N/AMVRSKVVGVATSTTSTEGTLTVSLSVTCPSSATGCNVNQIDGVYYLYGVLDGYYYCGLQMGNQSVQYDWTLNVSATPTSLASGATVFVEVTYFDTLPNKPYYTETYPFTLNSNGEASGEFSVCMVPVTIFPESSVGIKVTSVKSTSDQPISYTSSGITIIPED*
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