NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074075_15092

Scaffold Ga0074075_15092


Overview

Basic Information
Taxon OID3300005256 Open in IMG/M
Scaffold IDGa0074075_15092 Open in IMG/M
Source Dataset NameHot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5312
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameNorris Geyser Basin, Yellowstone National Park
CoordinatesLat. (o)44.733Long. (o)-110.708917Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033507Metagenome / Metatranscriptome177Y
F040183Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0074075_150922F033507GGAGMVRSNIAEVVASTTSSGSGGTLTVNLSVTSGSGVTQIDGVYYLSPEANGYYTCGLQMNNQSVRYSWTLHVSATPTSLANGATVSVEITYFDTYPSKPYYTETWPFTLNSNGQDSGEFSACMVPSTIFPESSVGVKVVGVKSATDQSIPYTSSGITIIPQ*
Ga0074075_150926F040183AGAAGGVKLKYPFPQRFHYLTALGGYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYFDVLDPVEPQNVNANSSERPPVLELKLNSTAITTAPTTIRLIIANGVATVWINNASTVLGYMNVPYIWQVRFAITGTSPSFSIVGTYEARE*
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